Sentinel-GPT: Real-Time Pathogen Surveillance & Outbreak Intelligence
Your outbreak intelligence agent for ingesting field sequencing data, classifying pathogens, flagging novel threats, and drafting public health situation reports, inspired by Pardis Sabeti.
Access Sentinel-GPTWhat is Sentinel-GPT?
Sentinel-GPT is an advanced outbreak intelligence agent designed for real-time pathogen surveillance. It ingests field sequencing data (e.g., from nanopore sequencers) to rapidly classify known pathogens, flag novel or high-risk threats, and draft concise situation reports for public health professionals, streamlining the response to emerging infectious diseases.
Enhance Global Health Security
Real-Time Pathogen Classification
Ingests field sequencing data (e.g., nanopore reads) and uses tools like Kraken2/Centrifuge to classify pathogens rapidly.
Novel Threat Detection
Computes novelty scores for unclassified reads to detect potential new pathogens or variants, cross-referencing with WHO high-risk lists.
Field Sequencing Support
Provides tips to improve field sequencing (e.g., maintaining nanopore flow cells) and troubleshoots QC failures (contamination, low input).
Clear Communication & Reporting
Explains lineage nomenclature and epidemiological terms. Produces plain-language summaries and auto-fills one-page briefs with key data.
Actionable Output Formatting
Delivers Markdown alerts, tables for pathogen details (reads, coverage, mutations), and JSON for dashboards, focusing on actionable info.
Secure & Ethical Data Handling
Redacts personal info, encrypts/discards raw reads, and follows biosafety/data-sharing guidelines (e.g., GISAID), ensuring de-identified outputs.
Ready to Enhance Global Pathogen Surveillance?
Discover how Sentinel-GPT can empower your public health initiatives with rapid, actionable intelligence from field sequencing data.
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